PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06923.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 252aa    MW: 27601.5 Da    PI: 7.8577
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06923.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.8e-32291212103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F+ k+y++++d++++ ++ w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++         weF+
  Zmw_sc06923.1.g00020.1.am.mk  29 FVAKTYHMVSDPATDAVVCWGVASNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDADR---------WEFA 100
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   h+sF +g+++ll  i rk+++
  Zmw_sc06923.1.g00020.1.am.mk 101 HESFLRGQTQLLPLIVRKRKK 121
                                   ****************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3519112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-4825118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3026118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-172952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-2829118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-178092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGSECYVQLQ AKQQQPPPAQ AGAGAIAPFV AKTYHMVSDP ATDAVVCWGV ASNTFLVLDP  60
AAFSDYLLPS YFKHRNFASF VRQLNTYGFR KVDADRWEFA HESFLRGQTQ LLPLIVRKRK  120
KPGCRELCEE GEEVRGTIKA VQRLREEQRG MEEELQAMDR RLQAAESRPG QMMTFLAKLA  180
DEPGAVLRAM LAKKEELAEA GGKGSTAPLE APGKRRRIGG GEDCGAVAGG DAAEQGMGAV  240
QFPFSVLGQV FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-291811818129Heat shock factor protein 1
5d5v_B2e-291811818129Heat shock factor protein 1
5d5v_D2e-291811818129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120RKRKK
2213217KRRRI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633152.11e-131PREDICTED: heat stress transcription factor C-1b
SwissprotQ942D61e-133HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A0E0N2341e-131A0A0E0N234_ORYRU; Uncharacterized protein
STRINGLOC_Os01g53220.11e-131(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141